Protein Info for ABZR86_RS04735 in Dyella japonica UNC79MFTsu3.2

Annotation: O-antigen translocase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 44 to 67 (24 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 173 to 194 (22 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 297 to 314 (18 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details amino acids 362 to 384 (23 residues), see Phobius details amino acids 390 to 409 (20 residues), see Phobius details PF01943: Polysacc_synt" amino acids 8 to 278 (271 residues), 42.3 bits, see alignment E=9.5e-15 PF13440: Polysacc_synt_3" amino acids 35 to 328 (294 residues), 48.5 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: K03328, polysaccharide transporter, PST family (inferred from 65% identity to xcv:XCV1725)

Predicted SEED Role

"lipopolysaccharide biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1X929 at UniProt or InterPro

Protein Sequence (416 amino acids)

>ABZR86_RS04735 O-antigen translocase (Dyella japonica UNC79MFTsu3.2)
MNIARAGLYSAIGTAARLVAGLVVVKLVAWAAGPDGVGKLGQFMSLMSLLAVLAGGGISA
AIVKYVAEYRDDPERLARLLRAALGYALCAAVLMGLAALLFSRQLALWLLDDVRYESLLR
VLAFAQVGIAFSNYLLAVINGFMDVRRLVFIQVVGSALSIALAAWLSWQQGLYGALLALV
LGQLLWLAIGLPAWWRSPDFRPGMLRAGFDRDMIVRLATFSLMTLSSALCAPLVNIAVRD
HLAAQFGWEQVGYWQAVTRVSDAYLLFLTTAINVYYLPRLAAVREREELKRELAQAWRQL
LPAAAVLALLVYVAREWVTRALFSADFAAANALYGPQLIGDVIKIGSFVLSYLMLAKAMT
GLFVLSEFVFAASYLGLVFVFTRWYGLPGAVYAFALNYLFYLFFNLLVARRYLRRL