Protein Info for ABZR86_RS04000 in Dyella japonica UNC79MFTsu3.2

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 812 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 87 to 101 (15 residues), see Phobius details amino acids 259 to 285 (27 residues), see Phobius details amino acids 323 to 345 (23 residues), see Phobius details amino acids 365 to 386 (22 residues), see Phobius details amino acids 414 to 434 (21 residues), see Phobius details amino acids 683 to 706 (24 residues), see Phobius details amino acids 717 to 735 (19 residues), see Phobius details amino acids 742 to 761 (20 residues), see Phobius details amino acids 775 to 798 (24 residues), see Phobius details PF12704: MacB_PCD" amino acids 23 to 233 (211 residues), 76 bits, see alignment E=5e-25 amino acids 461 to 641 (181 residues), 57 bits, see alignment E=3.4e-19 PF02687: FtsX" amino acids 276 to 389 (114 residues), 36.3 bits, see alignment E=5e-13 amino acids 689 to 804 (116 residues), 38.8 bits, see alignment E=8.7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1WU27 at UniProt or InterPro

Protein Sequence (812 amino acids)

>ABZR86_RS04000 ABC transporter permease (Dyella japonica UNC79MFTsu3.2)
MNVWLAELWRAWRASLRRPGFLLLAAGVLALGIGACAVAFVLVEQVLLKPLPLSQPEQLM
AAGKLRQGWPPRISTRQYAALQKLDGVQSIGLMAFATPTVNIMSRGMPQRAAVTYADPGL
LPTLGLQPQLGRNFIAGEEDSRGAQIVMLSHDFWERQYAGDPSAIGQILKVEGTPHTIVG
VLPEALSLSSYGGDIMLPADLGPDTAGDQHLYIAVVRLAAGASPAAVNAQVAARLRAEAE
SSGTDPAHRARFGVLGYQASLHVGGALVLVLFQAGALLVLLIAVVNEANLLFLRALALQR
DTAVRSALGARHWHLASPLLAEGLLVSLFGTGLGALLAMLGIAIVRSIIPPQLTGGELHL
GVQTLLLMLLVSLLVTLGSALLGIWRARAMVSFNDLREGGRSGGTQQQGRLNRVLVTAQV
MLTAVLLCACGIFLQQAWKNAHLQWGFDGANVATLALAPVQADYPDVRSVSALSQRLVER
MRQLPGVLGAAASTSLPVNDFFGTFGTPAHAPGNEVITVLYRAVGTDYFRLFGIRAQRGR
LFSTEDRRGSEAVAIISRAMAERQYGGNALGQQVQMDDAAHPGRPWTARIVGVVDDTYPR
SDRAGDPPPTELYVPLEQMPDALLASLRVNGSMQFALRVRGDVSGYAKALRELVATVAPE
QPIDDVRSMRSIVEENMSGSMTGIWICGVLAAMALLLAAAGLYAVMSVAVTAREHELGVR
AALGASPVRLAAAVLRGGMVQVAAGLASGLLLAAAFPRLFAASFAQLGTDVSIGPWVAGG
VCAVLLTFGLLACLMPAVRAGRVQPMRVLQGD