Protein Info for ABZR86_RS02175 in Dyella japonica UNC79MFTsu3.2

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF00126: HTH_1" amino acids 11 to 70 (60 residues), 70.5 bits, see alignment E=9e-24 PF03466: LysR_substrate" amino acids 98 to 289 (192 residues), 100.4 bits, see alignment E=9.6e-33

Best Hits

KEGG orthology group: K04761, LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator (inferred from 31% identity to ppr:PBPRA0273)

Predicted SEED Role

"Hydrogen peroxide-inducible genes activator" in subsystem DNA-binding regulatory proteins, strays or Oxidative stress or Thioredoxin-disulfide reductase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2A8L9 at UniProt or InterPro

Protein Sequence (302 amino acids)

>ABZR86_RS02175 LysR family transcriptional regulator (Dyella japonica UNC79MFTsu3.2)
MISTHLSAVSLRDLILVQAVRRHGSFNSAARAMHISPSGLSHQVQKVEQALGTPLFERGG
RRVVPTAGGQRLLEQIDAVLLAADHLQQAARAGETAFGGELRLGVLATLGPYLLPHLIAP
FPQHFPGARLSLSEGKPRGLLRRLQEGELDAVLAQPAPPVSGIAMRPLFFEPWEVMLRAD
HPLAGRRTLTLEQLDAADATLMAESRADDVLGGGHVQDVSLESLAALVGLRGGYALVPAL
AHERLASMPEVALAKFKGQAPGRQIALYWREASPWESDLQAFAELLRKLARQRPGLKLID
AA