Protein Info for ABIE53_006519 in Paraburkholderia graminis OAS925

Annotation: DNA-binding NarL/FixJ family response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF00072: Response_reg" amino acids 4 to 115 (112 residues), 66.4 bits, see alignment E=4.9e-22 PF08281: Sigma70_r4_2" amino acids 185 to 226 (42 residues), 31.1 bits, see alignment 2.9e-11 PF00196: GerE" amino acids 189 to 243 (55 residues), 59.9 bits, see alignment E=3e-20

Best Hits

KEGG orthology group: None (inferred from 90% identity to bug:BC1001_5585)

Predicted SEED Role

"Transcriptional regulator, LuxR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>ABIE53_006519 DNA-binding NarL/FixJ family response regulator (Paraburkholderia graminis OAS925)
MKFLVADDHELIRQGVKGMLRGLDADAQFDEADTWETLAAAARPDADHDLAIVDLHMPGM
SGASSLEMLLKANPALPVVVLSAEESPDEMRAVLAAGALGFVPKRQPASVMLKAIELVLS
GGAYVPMEALSLLGSRDAQPAQACAERAAASPQQVASTAAGQNPGTATLTEPIVQLQPLQ
PHQQHLLENLSPRQQDIMRLVHRGWTNKMIARELGVAEGTVKVHLSVIFRALGVHNRSTA
IAVINGWLEAGRTL