Protein Info for ABIE53_006449 in Paraburkholderia graminis OAS925

Annotation: type VI secretion system protein ImpL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1292 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 39 to 57 (19 residues), see Phobius details amino acids 443 to 462 (20 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 14 to 567 (554 residues), 455.3 bits, see alignment E=2.6e-140 PF14331: IcmF-related_N" amino acids 191 to 446 (256 residues), 279.8 bits, see alignment E=4e-87 PF06761: IcmF-related" amino acids 495 to 847 (353 residues), 262.8 bits, see alignment E=9.9e-82 PF21070: IcmF_helical" amino acids 1002 to 1089 (88 residues), 40.6 bits, see alignment 5.2e-14 PF06744: IcmF_C" amino acids 1118 to 1221 (104 residues), 87.5 bits, see alignment E=1.3e-28

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 96% identity to bug:BC1001_5647)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1292 amino acids)

>ABIE53_006449 type VI secretion system protein ImpL (Paraburkholderia graminis OAS925)
MRRFLNVLTHPRTLSIIGLLALAAVLFVGADTLQIDLMWPAIALGAVVALWLLVWAVRRL
RARRANNKLGEMLEQQAEKQSVEAGPAPTPARQAELDVLRTRLVDAVKTIKTSKIGQVSG
GSALYELPWYIVIGNPAAGKSSAVLNSGLQFPFADKNSAVIHGIGGTRNCDWFFTTEGIL
LDTAGRYSVHEEDRTEWLGFLGLLKRFRPKAPINGIIVTASIAELTSSKPEFAINLAKNL
RQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFSGSERHEYDRVWGATLPYEPDEKRDV
VGLFDEHFEELYDGLKEISVAQMSINRGNKLSPGQLSFPLEFSTIKPALRAFLATLFETN
PFQYKPIFRGFYFTSALQEGETNSAAATRIANRFGLSADSMPKPHSAFSKNGFFLRDLFS
KVIFADRQTVRQFASPAKTRMRYATFFGFVAVLALALGGWTWSTINNQQLAENVKADLDN
VVRLQQNRNDLQSRLQAMDVLEDRIDQLEQFRRDKPLAVSFGLYQGDRLEQRLLTEYYNG
VRQILLDPVSQNLASFLKDVNAHPDQLTPLNRTPDAAAIPVSAHNAMAANSQGGLYSDAS
PTNVEDAYNALKTYLMLSDKRHVETAHLTDQVARFWRGWLETNRGNMPRDEMIRSAERMI
TFYLARVSDDDWPMIDQNLGLVDQTRENLRRVVRGMPARQRVYEEIKARASTRFAPMTIA
RIVGENNTALVAGSYAIPGTFTREAWFQYVQPAIREAATKELQAKDWVLNTSAHDDLTLE
GSPEQIQKALVTMYKTDYAMHWQKIMQGIAVQSFGSFGQAVDAMNRLGDPQDSPIRKVLE
TAYDQTSWDNPSLFNANLKRAQSGVTSWFKQWFSRAPTGQLNANIDINGNPVEMPMGPIG
QEFSALGRMVQTGDNGSMLKGYMDTLSKVRTRFNVIKNQGDPGPGARQLMQQTLDGSGSE
LADSLKYVDEQMLTGLTDSQRKALRPLLVRPLMAAYAVVIQPASVEVNKVWNAQVYQTFQ
NSLANKYPFAGDAKVEAGAGEIAQVFGPDGSIAKFVGTTLGPLAVRRGDTLTARTWGDMG
LALTPDFTSGFARWVAPLAGGAAGASAGQGSAEPQTVFQILPQPSSGTTEYTLAIDGQQM
RYRNTPPQWTNFVWPNPSGSPGATLNATTFDGRTLQLVNEPGRYGLEKLINSAQRKRRPD
GTFDLSWTQGNITVAVSMRIISTSQASGGSSDAPQQQSLRGLRLPSSVADVSAAANSVTA
TAANATPAATAATAATAARPATTAVSNTGGAQ