Protein Info for ABIE53_006340 in Paraburkholderia graminis OAS925

Annotation: putative MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 110 to 133 (24 residues), see Phobius details amino acids 145 to 167 (23 residues), see Phobius details amino acids 173 to 190 (18 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 295 to 316 (22 residues), see Phobius details amino acids 325 to 343 (19 residues), see Phobius details amino acids 349 to 372 (24 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details amino acids 413 to 435 (23 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 400 (375 residues), 130.9 bits, see alignment E=5.4e-42 PF00083: Sugar_tr" amino acids 30 to 446 (417 residues), 143.5 bits, see alignment E=9.5e-46

Best Hits

KEGG orthology group: K08369, MFS transporter, putative metabolite:H+ symporter (inferred from 92% identity to bpy:Bphyt_5172)

Predicted SEED Role

"benzoate MFS transporter BenK" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>ABIE53_006340 putative MFS transporter (Paraburkholderia graminis OAS925)
MNVNAGPRLDRLPMSGFHRRIMWLIGIGMFFDGFDIYVASTVLGATLKTGFSTIGQNAIF
VSLTFLGMMLGSLGTGFLGDRFGRRFTYQANLAVFGLASLGAALAPNMSMLIACRFVMGL
GLGAENVVGYSTLTEFVPPQKRGKLQGLMAVFVVSGLPVAGLIGLALIPAFGWRAMFVLG
GFGALGVWYARKSLPESPRWLDSVGRHAEADAILRRIEDEVAQAHGGQPLPPPAVAKTPS
QAAAALSFGSLFSGAMLQRMIVGCVTLVVINTLLYGFVTWLPTFFVHQGFSIAKSFGFAL
VMSLGAPIGSAIGALTADSWGRKPTIIGASLAAIVFGAIYPFVSNPLLLPLVGLLLTIPI
YVLVALLFAIYIPELFPTEVRLRASGVCNTLGRGATIVTPFIVIALYARHGIVGVLALMI
GLLAIQIVVVAWLGVEPTGQRLEDLQPADPQTPDALRTDAHASPLK