Protein Info for ABIE53_006283 in Paraburkholderia graminis OAS925

Annotation: putative MFS family arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 117 to 143 (27 residues), see Phobius details amino acids 151 to 173 (23 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 234 to 255 (22 residues), see Phobius details amino acids 262 to 282 (21 residues), see Phobius details amino acids 294 to 312 (19 residues), see Phobius details amino acids 318 to 338 (21 residues), see Phobius details amino acids 355 to 376 (22 residues), see Phobius details amino acids 382 to 403 (22 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 317 (286 residues), 113.5 bits, see alignment E=1.1e-36 PF00083: Sugar_tr" amino acids 51 to 205 (155 residues), 38.6 bits, see alignment E=6.7e-14

Best Hits

Swiss-Prot: 39% identical to YGAY_ECOLI: Putative uncharacterized transporter YgaY (ygaY) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 73% identity to bur:Bcep18194_B2266)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (409 amino acids)

>ABIE53_006283 putative MFS family arabinose efflux permease (Paraburkholderia graminis OAS925)
MSTSCTPEVQHDPPTDSIERKEMPTGLVALMSVCCAVSVANVYYAQPLLDAISHDFHISH
SDVGGVITATQVGCALSLMFVVPLGDLLNRKRLIVCQLVLLAIACVAVALSGSQHALLAG
MIGVGLLGTAMTQVLIACAAALANESERGRVVGTAQGGVVVGLLMARSLAGVVADVAGWR
AVYLVSAIFAVGMLIVLLLFLPTPRPSRVQLSYAGLLRSMIELLLRERVLQVRGFLGLLM
FAAFSIFWSALVLPLSAPPHAMSHTGIGAFGLVGALGAMAAARAGSLTDRGHGQTTTCVA
LVLLCASWLPISLIDKSVILLIVGIILLDIGGQAIHVVNQSMIFSTRPEAHARLVGCYML
FYSAGSGLGAISSTVIYSRAGWPGVCALGFVVSMTAFAFWAATVRHAGR