Protein Info for ABIE53_006221 in Paraburkholderia graminis OAS925

Annotation: K+-sensing histidine kinase KdpD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 46 to 79 (34 residues), see Phobius details amino acids 93 to 110 (18 residues), see Phobius details PF13493: DUF4118" amino acids 17 to 120 (104 residues), 52.3 bits, see alignment E=2.2e-18

Best Hits

KEGG orthology group: None (inferred from 92% identity to bgf:BC1003_3858)

Predicted SEED Role

"FIG00321242: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>ABIE53_006221 K+-sensing histidine kinase KdpD (Paraburkholderia graminis OAS925)
MEVINSRRWAPRGRNRWIAAAAALGAAAIIRAILHPLLGPFMPGTAFLIAAVLVEYYCGL
APALCVMLLGLCLADYLFVPPYGHIDVIDASDLHLLISYPLLTILIISLVERLRRAQYRA
ELLAAVAQSRYEMLLRHDNERLLARRATDEMHRMLRHIAQYNRSLILIKALDPANSLPPG
SFVAAAATATPNALVDDASLHAGIAYCAKHAQVHEEDLAHVRVHLTPGHHRMRFLSGARD
DWRPVECVCDRFTTSSGEFLVLRADD