Protein Info for ABIE53_006208 in Paraburkholderia graminis OAS925

Annotation: DNA-binding SARP family transcriptional activator/pimeloyl-ACP methyl ester carboxylesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 PF03704: BTAD" amino acids 109 to 229 (121 residues), 45.4 bits, see alignment E=1.7e-15 PF00561: Abhydrolase_1" amino acids 266 to 496 (231 residues), 60.5 bits, see alignment E=3.1e-20 PF12146: Hydrolase_4" amino acids 266 to 495 (230 residues), 50.2 bits, see alignment E=3.3e-17

Best Hits

KEGG orthology group: None (inferred from 85% identity to bpy:Bphyt_5093)

Predicted SEED Role

"transcriptional regulator, SARP family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (514 amino acids)

>ABIE53_006208 DNA-binding SARP family transcriptional activator/pimeloyl-ACP methyl ester carboxylesterase (Paraburkholderia graminis OAS925)
MPLFSVHTLGFPEIRRDDRLCPLPLRKGVALLVYLAEATGAVGREVLATMLWPEGREEVV
RARLRRLLHRLQLTLGDDVLSIDRSTVRWSSAVSLQLDSQLFEQACDRSEFEWACRHYSG
DFLEGFSPGDCPQFDEWAFFRREALRGRAIQALERVVHDRNAAGDYASAAAHAGRLVELD
PLSEVYGRQLIRNLLLAGDRLTAQRHLAALTQRLRDELNVAPESATRALLDADASLPVEH
PPSTRYVSGDGVHLAFQTYGAGRIDVLLVPGFVSHVERVWEEPLCRAFLSALTEMGRLIL
LDRRGIGLSDRVGFNPSVHATAQDIGTVLDAAGSRRVVLFGASEGGPACIKFAAEHSDRV
AGLVLFGSLAKGSATPDYPHALQASQYDTWLRQLVAGWGGPAGIETFAPSLAGDPQARAW
WAGLLRAASSPGAIKGVLEALRDMDVRPLLGRISVPTLVLHREGDRAVRIGAGRHLASHI
AQARFVGLDGADHWVFAGDQQPVLDNIRQFVGNP