Protein Info for ABIE53_006170 in Paraburkholderia graminis OAS925

Annotation: cytochrome c peroxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 50 to 71 (22 residues), see Phobius details PF03150: CCP_MauG" amino acids 109 to 313 (205 residues), 110.2 bits, see alignment E=1.5e-35

Best Hits

KEGG orthology group: K00428, cytochrome c peroxidase [EC: 1.11.1.5] (inferred from 90% identity to bgf:BC1003_5853)

Predicted SEED Role

"Methylamine utilization protein mauG precursor"

Isozymes

Compare fitness of predicted isozymes for: 1.11.1.5

Use Curated BLAST to search for 1.11.1.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (502 amino acids)

>ABIE53_006170 cytochrome c peroxidase (Paraburkholderia graminis OAS925)
MLARFAFFIVYEALFVIIAMNRSSDAALPPTLPAGGEPGPIVTRRSLLKLAAWGAVCSVI
AAVALGAYALVYPERMPAAVGAIVEDITGANPQPVHLMRPARAPLSAVALLGKQIFFDPS
LSASGTQSCASCHSPKNSYSPDNAFPVQLGGAHMNEAGYRPPPSLTYLYRQAPFSIGPDQ
GDTDAPVDLTQLASQAAGVQRAQKTALAAPAAPAMVPQGGLFWDGRADTLQDQAIGPLTN
PVEMANKTPEDVAHKLLQTKYIDQFKQIFGPAIAANPSLLISEAMFAVGRYQIEDPSFHA
FTSKYDYWLEGKARLTHAELHGLQLFNDKDKANCAGCHLSQPTRDGLPPVFTDTQYEALG
VPRNPAIPANRDPKFFDMGVCGPFRDDLAKQTQYCGMFLTPTLRNVANRRVFFHNGVYHD
LKQVMDFYNLRNTSPEKIYPRDASGHVQKYNDLPAQYHANVDVSDAPFDRKPGDQPAMSE
EDIQDIIAFMKTLSDGYREGGS