Protein Info for ABIE53_006040 in Paraburkholderia graminis OAS925

Annotation: type III secretion protein V

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 694 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 33 to 52 (20 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 236 to 257 (22 residues), see Phobius details amino acids 278 to 296 (19 residues), see Phobius details amino acids 302 to 319 (18 residues), see Phobius details TIGR01399: type III secretion protein, HrcV family" amino acids 11 to 692 (682 residues), 876.8 bits, see alignment E=5.5e-268 PF00771: FHIPEP" amino acids 22 to 684 (663 residues), 681.8 bits, see alignment E=5.6e-209

Best Hits

KEGG orthology group: K03230, type III secretion protein SctV (inferred from 97% identity to bug:BC1001_6053)

Predicted SEED Role

"Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)" in subsystem Type III secretion systems, extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (694 amino acids)

>ABIE53_006040 type III secretion protein V (Paraburkholderia graminis OAS925)
MFKTLKLPAVGEIGIALLVVAIISLMILPLPPFLIDILLAINITISVTLLMVTMYVPNVV
SLSVFPSLLLFTTLYRLSLNIASTKSILLHADAGNIIESFGELVVGGNLVVGMVVFVIIT
TVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRANLLTPEEARRKRATLAVESQL
HGGMDGAMKFVKGDAVAGLIITLINIIAGIAVGVAYHEMTAGEAANRFSILSVGDAMVSQ
IPSLLLSVAAGVMITRVSDERDARPLSLGDEIGRQLSASARALYFASLLLLGFAAVPGFP
TSLFLLLAAILAFCGYRLGKRKPAATTHAGEAVNAMQRAGSKAETPAILTRAPQFTCPLG
VRISPDLVARLSTAALDRSFETERARLQEYLGLPFPGITMWTSDELPASSCELLMHDVPY
CAIELPPGKVMLPDPRLAGTREPISADAEALAARSEKRRGLDGGPGPTWWIDEKSLPPKQ
PAWRAEQVIAHASVAMLRKHASLFLGIQEVQWILDQQNAEYPGLVAEVQKVLPPQRIADV
LRRLLEEQIPIRNVRNILESLVVWGAKEKDMLMLTEYVRGDLARFLAHRAAGAGRQLPAV
LFDLPVEQHIRQAIKQTPTGNFLALPPDEVGFLIDRIQSFVGDTPRDGVALVTSMDIRRY
VRRMIEARLGWLAVYSYQELGEHVELQPLGRVTI