Protein Info for ABIE53_005830 in Paraburkholderia graminis OAS925

Annotation: putative MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 47 to 69 (23 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 226 to 243 (18 residues), see Phobius details amino acids 262 to 283 (22 residues), see Phobius details amino acids 291 to 310 (20 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 350 to 373 (24 residues), see Phobius details amino acids 379 to 398 (20 residues), see Phobius details PF07690: MFS_1" amino acids 2 to 336 (335 residues), 144.2 bits, see alignment E=4.8e-46 amino acids 266 to 401 (136 residues), 34.9 bits, see alignment E=8.3e-13 PF00083: Sugar_tr" amino acids 12 to 412 (401 residues), 177 bits, see alignment E=6.7e-56

Best Hits

KEGG orthology group: None (inferred from 94% identity to bcn:Bcen_4932)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>ABIE53_005830 putative MFS transporter (Paraburkholderia graminis OAS925)
MLPVLVGLWHLSASQIGVLIAAGYLGQVVGALVFGWLAERIGRVPSATVTVGVMSVMSVV
CAFTGSLHMLFLMRFLQGIGVGGEVPVAATYINELSQAHGRGRFFILYELIFPLGLLAAA
QLGAFIVPRFGWEYMFLIGGIPGIVVAILIARLPESPRWLISRGRFDKAERIIERLEAST
RKRNLDTRTQKAEVDERVVGLLNGLESKQKGTWKELFSPFYRGRTVVVWLLWASSYFVAN
GINNWLPSLYRTVYHLPLQESLHMASISNVLSTCGVLACALLIDRVGRRRWAMACFVISG
ILLAVLGIHGAGSAWSVMLLGSSAYAVMTTTTVLLYLYTPEIYPTRMRAIGTGLATSWLR
AASAAAPAIVGVVLTGKGIAAVFIMFAVVSAVGFLVAGRMVETTNRALEEISP