Protein Info for ABIE53_005555 in Paraburkholderia graminis OAS925

Annotation: fatty acid desaturase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 transmembrane" amino acids 25 to 43 (19 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 203 to 221 (19 residues), see Phobius details PF00487: FA_desaturase" amino acids 51 to 283 (233 residues), 99.5 bits, see alignment E=1.4e-32

Best Hits

KEGG orthology group: None (inferred from 81% identity to bug:BC1001_3895)

Predicted SEED Role

"Fatty acid desaturase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (343 amino acids)

>ABIE53_005555 fatty acid desaturase (Paraburkholderia graminis OAS925)
MAIYLDDTQRNAIARLSMSRAWRTQWPTWALIVAIYGGWFGLATHARVLGLPLTTALLAL
VSAWYMSLQHELLHGHPTRSAHLNALLGFAPLAVWFPYRVYRDSHLQHHDDPQLTKPGHD
PESYFVDGEVWERAGWAMRALLTCRNTLAGRLLLGPAFAIAATGVDALRKIKRGDWRDVP
AWLAHFAALAALTAWLQYVCSIPAWVFILGVGYGALSLGSLRSFREHRAAHECAHRTVIN
EAGLFWRLLYLNNNFHLVHHDLPHVPWFALRAVYEASREQYIKRSGGFLVAGYGEWVRHN
AFVPAENPVHDRPRGFAPAFKEPAMYAGKALLIAASRDESENR