Protein Info for ABIE53_005140 in Paraburkholderia graminis OAS925

Annotation: putative spermidine/putrescine transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 73 to 96 (24 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 204 to 229 (26 residues), see Phobius details amino acids 255 to 277 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 89 to 274 (186 residues), 41.9 bits, see alignment E=4.8e-15

Best Hits

KEGG orthology group: None (inferred from 95% identity to bgf:BC1003_4172)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>ABIE53_005140 putative spermidine/putrescine transport system permease protein (Paraburkholderia graminis OAS925)
MMQTTAMDPSERHRQREDRAMLLLLAPALFVVVVLLVVPLAWLSWQSIWHDGGFTLVNYR
RIFTGTYLDTFLLTFRLSAIVTGVTLLLGYPVAYFAASVSPRWSALILGMVILPFWTSVL
VRTYAWLVLLQRTGLINKALLEMGLVDRPIQLAYNQFGTILAMVHILLPFMVLPLYSAMQ
KIPANLSQAGASLGGSPLHVFWRVFLPLSMSGVVAGVTLVFVLCLGFYITPELMGGGKSI
MVSMVVSRNVEIYNSWGAASAVSVVLLVCVFAIFYAASRVIPLEKTLGAK