Protein Info for ABIE53_005035 in Paraburkholderia graminis OAS925

Annotation: peptide/nickel transport system ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 615 PF00005: ABC_tran" amino acids 28 to 187 (160 residues), 84.4 bits, see alignment E=5.9e-27 amino acids 306 to 457 (152 residues), 98.6 bits, see alignment E=2.4e-31 PF08352: oligo_HPY" amino acids 239 to 285 (47 residues), 16.1 bits, see alignment 5.8e-06 amino acids 509 to 576 (68 residues), 36.5 bits, see alignment E=2.6e-12 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 509 to 598 (90 residues), 43.7 bits, see alignment E=3.4e-15

Best Hits

KEGG orthology group: None (inferred from 94% identity to bug:BC1001_5149)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (615 amino acids)

>ABIE53_005035 peptide/nickel transport system ATP-binding protein (Paraburkholderia graminis OAS925)
MMTDRDMIEVKGLRVVAGAAHGPVTEIVKGVSFSVKKGEVLALIGESGSGKTTIALSLLG
YARAGCSISGGSVRIGEVEVLSLDAKGRRALRARTVAYVAQSAAAGFNPARTIMDQVTEP
ALLHQLMTKDAARAKAIALFRALALPAPDTIGERYPHQVSGGQLQRLMAAMALITDPAVV
VFDEPTTALDVTTQIEVLAAFKKVVRELGTTAVYVSHDLAVVAQMADRIVVLNGGAVKEN
GAVAQVLDAPVDAYTRQLLAATRRPEAPSAALQDGAGQVPPLLQIRGLSAGYGRIGRDGV
PAVRVLDDVSLSIARGSALGVIGESGSGKTTLARVVAGLVDRARGDVLFNGEPLPAQLSR
RTPEQYRQIQIVFQNADTALNPSHSIADILGRPLAFYHHLRGAAAKKRMLALLDLVKLPA
SIATRTPAGLSGGQKQRVNLARALAADPALILCDEVTSALDTVVGAAILDLLAELRRELG
VSYMFISHDISTVRAICDEVIVLYAGQRVEAGQRDVLAAPPYHPYTGLLVDSVPELKPGW
LDARRHVAACKLPAMGESAAVPELCSFRSRCPVRIDGICNMTPPSLKKLPSGAEILCHHS
AAELSRLQNVETIPA