Protein Info for ABIE53_005034 in Paraburkholderia graminis OAS925

Annotation: peptide/nickel transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 transmembrane" amino acids 60 to 85 (26 residues), see Phobius details amino acids 126 to 151 (26 residues), see Phobius details amino acids 174 to 199 (26 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details amino acids 292 to 313 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 142 to 321 (180 residues), 98.3 bits, see alignment E=2.3e-32

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 88% identity to bgf:BC1003_4331)

Predicted SEED Role

"Dipeptide transport system permease protein dppC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>ABIE53_005034 peptide/nickel transport system permease protein (Paraburkholderia graminis OAS925)
MMSQPDHHVPHAGTELYGVSRDELVADIPADMAAETLAADTATTSAPAKYNPLQRLVHRF
SVLGLLGLVMVLFWLLVAFVGPLVAPYQGGALTSTEIFGRYSAAYPLGTDYLGRDMLSRI
LYGARYTVGLALAAAVLASVIGTFFGLLAAVSGKWVDEVLSRLFDALISIPSKVLALVVI
AAFGSSIPMLTTVAALAYIPGAFRISRSLALNLMGLEYVQVARARGEGLLYIARVEVLPN
MIHPMLADFGLRFVFIVLLLSGLSFLGLGVQPPNADWGSLVRENIGGLSEGAPAVLMPAV
AIATLTIGMNLLIDNLRRRSRSHGDA