Protein Info for ABIE53_004716 in Paraburkholderia graminis OAS925

Annotation: putative MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 76 to 97 (22 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details amino acids 166 to 189 (24 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details amino acids 311 to 329 (19 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 360 to 383 (24 residues), see Phobius details amino acids 395 to 416 (22 residues), see Phobius details amino acids 423 to 446 (24 residues), see Phobius details PF07690: MFS_1" amino acids 47 to 324 (278 residues), 106.1 bits, see alignment E=1.9e-34 amino acids 318 to 456 (139 residues), 33.7 bits, see alignment E=2e-12 PF00083: Sugar_tr" amino acids 74 to 456 (383 residues), 187.6 bits, see alignment E=4.2e-59

Best Hits

KEGG orthology group: K08368, MFS transporter, putative metabolite transport protein (inferred from 95% identity to bug:BC1001_4829)

Predicted SEED Role

"Inner membrane metabolite transport protein YgcS"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>ABIE53_004716 putative MFS transporter (Paraburkholderia graminis OAS925)
MNNQDIQASALGLAPAFPAAASSATRAVSIDDVPLNAFHIKIAGLTFGAHFTEGFALGTI
GYALAAMNRQMPIDAFWMGMIGSSALMGIFLGSLVFGWLSDRLGRQKIFLMSFVIITVAA
FAQFYVHSPFELCLLRVLIGFGMGGDFAVGHAILAEFSPRKHRGTLLGSFSVIWTVGYVV
ANVLGMHYADASPDAWRWLLASAGIPAVIVLIARMGTPESPRWLLGKGRVAEAKSVVLKH
FGENVTLDGVHDEHAQTASGFMRLFEKDLIRRTIFNCAFFVCLVIPYFAIYTFLPTILKA
IHLNNDSGADLLLNGFLVLGALIGIWLTIKLSRRVFLIGSFAVTCVSLIALSVLPESATL
AMIVAFGIFTLTMSAFSNLVGVFPPECFPTEVRACGVGLAIACSRLGSAVGTFLLPLGIA
GFGFHVTMMVLAAVLLVGMVVSIAWAPETKHLTLNQASGG