Protein Info for ABIE53_004609 in Paraburkholderia graminis OAS925

Annotation: putative MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 43 to 67 (25 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 165 to 188 (24 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 274 to 294 (21 residues), see Phobius details amino acids 313 to 336 (24 residues), see Phobius details amino acids 343 to 362 (20 residues), see Phobius details amino acids 368 to 391 (24 residues), see Phobius details amino acids 403 to 422 (20 residues), see Phobius details amino acids 434 to 454 (21 residues), see Phobius details PF07690: MFS_1" amino acids 46 to 379 (334 residues), 134.8 bits, see alignment E=3.5e-43 amino acids 314 to 455 (142 residues), 41.9 bits, see alignment E=6.3e-15 PF00083: Sugar_tr" amino acids 77 to 466 (390 residues), 137.3 bits, see alignment E=7.3e-44

Best Hits

KEGG orthology group: None (inferred from 97% identity to bgf:BC1003_5030)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>ABIE53_004609 putative MFS transporter (Paraburkholderia graminis OAS925)
MRTIDNTIGDRSAAGVSGPVTRGSIIARLERLPKNAMQVRARILIGLATFFDGFDVIAIA
ATLPVLIAKWHLTPWEIGFLIGSGSVGQLIGAFVFPWYAERHGRVRAIALSSGIIGVTSI
ACGFAPTFAAFVVLRVIQGLGLGGELPVAATYINEISRAHGRGRFVLLYEIVFPVGLLAS
NALGAWIVPRFGWQAMYFIGGMPLILFFVLRKLVPESPRWLAERERMADADAAVHAFERA
AKGPLPPVVHSAEFEAMANRHPKRRMGDLFGPAYLKRTLAVAMLWITCGFIQYGLSTWLP
TIYRTIYHAPLQLALNLAVAASVLGVVGSLTCALLVDKVGRKPIINLSFLACAVSLLMAG
VLHDSSVYVVATCCALSLGFLACGFITAYVYTPELYPTSIRAMGCGVGGAWLKVAAIFAP
AIVSKTMIGGNLQIAFYILAAVPFLAAVAVHFLGIETKGKVLEQLEA