Protein Info for ABIE53_004519 in Paraburkholderia graminis OAS925

Annotation: glycerol transport system ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF00005: ABC_tran" amino acids 20 to 160 (141 residues), 100.1 bits, see alignment E=2.6e-32 PF08402: TOBE_2" amino acids 273 to 347 (75 residues), 32.4 bits, see alignment E=1.3e-11

Best Hits

KEGG orthology group: None (inferred from 93% identity to bgf:BC1003_4862)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>ABIE53_004519 glycerol transport system ATP-binding protein (Paraburkholderia graminis OAS925)
MVLELEQVSVVSGGQPYLYGVDLRLVPGAINVLLGPTQAGKTTLMRVMAGLDRPNAGRVL
VDGQDVTGVSVRQRNLAMVYQQFINYPAMTVFQNIASPLQLQKTDSAEIRRRVLEVAGKL
HIEHLLERRPSELSGGQQQRCALARALVKRTSLVLLDEPLVNLDYKLREELRMELTTLFA
DGKTTVVYATTEPLEALLLGGYTAIIDKGRVLQFGPTLDVYNAPVNVDAAAVFNDPPMNM
LTSELNGNGSARLPIGVDVPLRQGTAANGACRIGIRPGHLRLHAKAPHAVAVPCRLELAE
LSGSETYLHLRTLTGGIDLVAQLQGVHQIELGTELNVFIDPDELFVFGADTKLVSSPEAA
HGAH