Protein Info for ABIE53_004345 in Paraburkholderia graminis OAS925

Annotation: peptide/nickel transport system ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF00005: ABC_tran" amino acids 32 to 191 (160 residues), 104.3 bits, see alignment E=4.4e-34

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 89% identity to bgf:BC1003_4968)

Predicted SEED Role

"Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>ABIE53_004345 peptide/nickel transport system ATP-binding protein (Paraburkholderia graminis OAS925)
MRNDEADAPLCEIDDLRIAFRAHDGTLNEAVRGLSLTLKKGERLGIVGESGSGKSLTGRA
LLGLLPPAAHCTAKRLRFDGHDMLTMPTDKRRRFCGSQMGMVLQDPKYSLNPVMTVEQQM
REAFALHEPKLGRRAMRAKVIAALESVHIRNPERVARSYPHELSGGMGQRVMIAMMVSTG
PRLLIADEPTSALDVLVSMQVLAVLDELIEKHQTGLIFISHDLPLVMSFCDRVVVMYAGR
VIETCAARDLIHAQHPYTRGLLAANPPLVDPPAELPVLSRDAAWLSKIGDIGDIGQQQGA
PL