Protein Info for ABIE53_004338 in Paraburkholderia graminis OAS925

Annotation: putative MFS family arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 51 to 74 (24 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 140 to 164 (25 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 222 to 244 (23 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details amino acids 310 to 328 (19 residues), see Phobius details amino acids 349 to 368 (20 residues), see Phobius details amino acids 374 to 397 (24 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 303 (278 residues), 79.5 bits, see alignment E=1.2e-26

Best Hits

Swiss-Prot: 41% identical to YDER_BACSU: Uncharacterized MFS-type transporter YdeR (ydeR) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 86% identity to bug:BC1001_4492)

Predicted SEED Role

"FIG00466008: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>ABIE53_004338 putative MFS family arabinose efflux permease (Paraburkholderia graminis OAS925)
MPSTNQSPAAVATPASIATRPYAIAVGIAVLGLYASQALVNDLATSVGLGAWANMVTMLT
LTGYAAGLLLLVPLVDLLPNRPLIIATLGAQVLALAVLAAAREPVAFLAASFFVGLTSSA
IQMLVPVVASQAPEADRGRVVGDVMSGLMLGVLLSRPAASLIAGAFGWRSYYAIDAAALA
VMSAWLWTHVPDRRPVHQSSYAALIGSLLHLIRDEPVLRRRALYQGLLMVSFNLFWTSVA
LKLASAPLRLGHVGVGLFALAGAGSTIIAPVAGRLGDRGLDRQATIAFHSIVVLASCIAL
LGGSSGLPPAASLTLLVLAALLLDLGVIGDQAMGRRAVNLLNPQARGRVNGLFTGLFFVG
SAIGALLAGPAWAFGHWMGVCMAAAAFALAANVLHVVQTAAPTRTSRTAPSSAEPRP