Protein Info for ABIE53_004248 in Paraburkholderia graminis OAS925

Annotation: alpha-beta hydrolase superfamily lysophospholipase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF12697: Abhydrolase_6" amino acids 32 to 241 (210 residues), 52.5 bits, see alignment E=3.3e-17 PF00561: Abhydrolase_1" amino acids 33 to 145 (113 residues), 33.7 bits, see alignment E=9.6e-12 PF12146: Hydrolase_4" amino acids 40 to 139 (100 residues), 44.3 bits, see alignment E=4.2e-15 PF00326: Peptidase_S9" amino acids 50 to 251 (202 residues), 23.3 bits, see alignment E=1.3e-08

Best Hits

KEGG orthology group: K06889, (no description) K07397, putative redox protein (inferred from 96% identity to bug:BC1001_5715)

Predicted SEED Role

"FIG00467042: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>ABIE53_004248 alpha-beta hydrolase superfamily lysophospholipase (Paraburkholderia graminis OAS925)
MSAQAFEFDGPHGYRLAGRLELPDGEPRGWAILAHCFTCGKDSLAASRVARALAAHGIGV
LRFDFAGLGNSGGSFADTTFAADVDDLVAAGNAMTSDGKPPSILVGHSLGGAAVLMAAGQ
MPGIRAVATLAAPFDTRHVLHQFAPQSLETIEAHGEAEVLLAGRPFVVRKSLVDDLACHN
LESRIAGLRIPLLVLHSPLDSTVGIENAARIFAAAKHPKSFISLDNADHLLTRRADADYA
AAMISTWASRYLIS