Protein Info for ABIE53_004112 in Paraburkholderia graminis OAS925

Annotation: cation diffusion facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 35 to 56 (22 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 110 to 133 (24 residues), see Phobius details amino acids 157 to 182 (26 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details TIGR01297: cation diffusion facilitator family transporter" amino acids 7 to 293 (287 residues), 99 bits, see alignment E=1.5e-32 PF01545: Cation_efflux" amino acids 9 to 216 (208 residues), 141.5 bits, see alignment E=1.5e-45

Best Hits

KEGG orthology group: None (inferred from 95% identity to bgf:BC1003_5270)

Predicted SEED Role

"putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>ABIE53_004112 cation diffusion facilitator family transporter (Paraburkholderia graminis OAS925)
MKEESPKAIIYALAANFGIAVCKFAAASFTGSGSMFAEAIHSTADCGNQLLLLFGLRQAR
RPASPLHPMGGGREINFYSLLVALLLFFVGGAFSVYEGVHRLMAREPLQYAYVALVVLGV
SVVLEAFSLWGALREIRRVHPEKNIWRWFRETRESELLVVAGEDIAALVGLAIAFAAVLL
TLVTGNPVYDAFGSIAVGLLLMVIAGLVAREVKSMIVGESASPEVRRAIEAHLRARSEIR
GIINMITLQWGRHVVVAVQAEMIDYASGRAMVDAINIIEADLQAAFPQVRWVFFEPDVPR
A