Protein Info for ABIE53_003961 in Paraburkholderia graminis OAS925

Annotation: putative MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 51 to 78 (28 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 173 to 196 (24 residues), see Phobius details amino acids 202 to 221 (20 residues), see Phobius details amino acids 283 to 301 (19 residues), see Phobius details amino acids 320 to 341 (22 residues), see Phobius details amino acids 349 to 369 (21 residues), see Phobius details amino acids 375 to 396 (22 residues), see Phobius details amino acids 415 to 432 (18 residues), see Phobius details amino acids 438 to 456 (19 residues), see Phobius details PF07690: MFS_1" amino acids 54 to 321 (268 residues), 121.7 bits, see alignment E=5.3e-39 amino acids 324 to 463 (140 residues), 57.5 bits, see alignment E=1.8e-19 PF12832: MFS_1_like" amino acids 79 to 441 (363 residues), 29.1 bits, see alignment E=8.1e-11 PF00083: Sugar_tr" amino acids 83 to 470 (388 residues), 180 bits, see alignment E=1.2e-56

Best Hits

KEGG orthology group: K08369, MFS transporter, putative metabolite:H+ symporter (inferred from 43% identity to rec:RHECIAT_CH0003371)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>ABIE53_003961 putative MFS transporter (Paraburkholderia graminis OAS925)
MQDGNTLQGAVTRDDTQTAAVEAAVDAASAALIRRIESVPFSRWHTKARIIVGSATFFDA
FDALSIAFVLPVLIGLWHIEPLEIGVLIGASYIGQFIGALTFGWYAERRGRIRSVTIAIA
IMSVMSMGCALSGSFAVLLVCRFIQGIGVGGEMPVAATYISELSNAHGRGKYFLLYELIF
PVGLMATGQIGAWLVPLIGWKIMFWIGAVPGLLIALLIARLPESPRWLISKGRFDEAEAV
VRDMEASTDRRIEPGRRQQPNKGVMNARAGWRELLSPFYRGRTLVVWVLWATAFFIANSL
NNWLPTLYRSVYHLPLQTALRAASMTNVAQVALLLICAYVIDRVGRRNWTVSAFCLAAIL
FACLGLFAAHDVWSAMVLGTLSYGLIGSIAAVLYLYTPEVYPTRMRATSTGLATSWLRLA
SAVGPSLAGLLLHKRGIGSVFVMFAVVAVVGAICALRMTETRERSLEEIAP