Protein Info for ABIE53_003900 in Paraburkholderia graminis OAS925

Annotation: methyl-accepting chemotaxis protein-1 (serine sensor receptor)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 581 transmembrane" amino acids 77 to 100 (24 residues), see Phobius details amino acids 250 to 275 (26 residues), see Phobius details PF02203: TarH" amino acids 68 to 238 (171 residues), 132.1 bits, see alignment E=4.3e-42 PF12729: 4HB_MCP_1" amino acids 72 to 248 (177 residues), 56 bits, see alignment E=7.5e-19 PF00672: HAMP" amino acids 275 to 325 (51 residues), 37.9 bits, see alignment 3.6e-13 PF00015: MCPsignal" amino acids 390 to 545 (156 residues), 136.5 bits, see alignment E=1.7e-43

Best Hits

KEGG orthology group: None (inferred from 71% identity to bxe:Bxe_B2520)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (581 amino acids)

>ABIE53_003900 methyl-accepting chemotaxis protein-1 (serine sensor receptor) (Paraburkholderia graminis OAS925)
MLSLSNASNASNASNASNASNASNASNASNASTASTADMATPFSEPDPVSNADAFGATDR
AAAPAGLRKAISLQQRIALTMALLAALMIAIGVLGLAGAWRANQATRDTYENKLTAAVHI
GNAELLMARTRLVLGGAMAATDTARAGEQIRHAADFLKQSDEQWRSFVNEPHEAGEASLI
DAAGQRRDAMRVAMRAFLDALQSGDRSTAQRIGVSQLSTLFNDMSAANDTLKRSLYANAK
RSYDDAEHYFKLFFAGSTAMLAFGVAAAAFSWLALRRAIVAPLRDALAHFDAIAAGDLSR
TVARHRADEMGQLLDGLHQMQARLAQTVTAVRDSCESIGTAVGEIAAGTLDLSARTEEQA
ASLEQTAASMSGLTETVRRNATRAQQAYGVAQEAASAANQGNHAVEEVSKTMARIDASSR
KIADITGIIKGIAFQTNILALNAAVEAARAGVHGRGFAVVAAEVRSLAQHASTAAKDIGV
LVVDSVGAAADGSTLVTHAEGAIRAVLDAAGRFREVMSEMTAAAEEQRVGIEQVDAALTM
MDSITQQNAALVEQASACAQLLDEQSRQLSRQVAVFRIGAA