Protein Info for ABIE53_003879 in Paraburkholderia graminis OAS925

Annotation: uncharacterized protein YgbK (DUF1537 family)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 PF07005: SBD_N" amino acids 4 to 222 (219 residues), 176.8 bits, see alignment E=6e-56 PF17042: NBD_C" amino acids 262 to 417 (156 residues), 80.7 bits, see alignment E=1.9e-26

Best Hits

Predicted SEED Role

"Domain of unknown function DUF1537"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (448 amino acids)

>ABIE53_003879 uncharacterized protein YgbK (DUF1537 family) (Paraburkholderia graminis OAS925)
MSMLIIADDLSGAADCAIGFASAGYRTVVALEASAQALDAHAADVIAADTDTRRLTAAEA
ARRTAAAWQALRVPGRRLYKKIDSTLRGNWAAEVAALQSLAGLAIVAPAFPATGRTLRGG
RVLVHGKPLETTDTWKLENAGRAADLHAMLAEVGLSTAQLNVDALREGGQALTARIAAVA
ASGTQALIVDAETSEDLLTLAQATTQMDQALFWVGSGGLAREIASLEGLFGARAAEETTS
ASERQREKQEKQQKQQDHSPVLVLVGSLSAVSERQCAMLRDRAGMAELTVPPGVLRDGER
HADWAAWQTRIGEALGTRADLLLRIGRDDAFDPAEGALLSAALAALVKPHFAALGGLIAT
GGETARAMLSAAGIGSIELIAEIEAGVAVGKPVATCALRPHLRIVTKAGAFGTDHALFAA
WRYLHEAPAEPAASAAPAAAGTGLHDSA