Protein Info for ABIE53_003327 in Paraburkholderia graminis OAS925

Annotation: peptide/nickel transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 93 to 118 (26 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details amino acids 257 to 280 (24 residues), see Phobius details PF12911: OppC_N" amino acids 21 to 67 (47 residues), 36.3 bits, see alignment 4e-13 PF00528: BPD_transp_1" amino acids 108 to 289 (182 residues), 90.7 bits, see alignment E=9.8e-30

Best Hits

Swiss-Prot: 36% identical to DDPC_ECOLI: Probable D,D-dipeptide transport system permease protein DdpC (ddpC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 95% identity to bgf:BC1003_2764)

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>ABIE53_003327 peptide/nickel transport system permease protein (Paraburkholderia graminis OAS925)
MSTIVPPAAPRAASEPRFDPLRVLLRSPTFVVGLVIVVWWIVCAIAGPWFVPVDPYASDP
LNSLMPPDHTHWFGTDQLGRDVFSRVIVGARDILTIAPLATLLGTATGTALGLVVGYFDG
WVDNVVGRAIDAILALPLVIVALLALAAVGASNFTVILVIGITFAPITARTVRAAVFAER
HLDYVAAAQLRGERAPYIMFAEILPNVLPPIIVEATVRLGYAIFAVATLSFLGFGIQPPS
ADWGLALSESYTLMAGGAWWTVVFAAAAIASLVVGVNLIADGVQGVLDR