Protein Info for ABIE53_003104 in Paraburkholderia graminis OAS925

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1183 PF00271: Helicase_C" amino acids 927 to 977 (51 residues), 26.8 bits, see alignment (E = 2.6e-10)

Best Hits

KEGG orthology group: None (inferred from 90% identity to bps:BPSL0765)

Predicted SEED Role

"Superfamily II DNA and RNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1183 amino acids)

>ABIE53_003104 hypothetical protein (Paraburkholderia graminis OAS925)
MGNHSKNQASLAAAVPTSVQLRAELEELVERELLGPRGGADEEVAETRVQDRYLVGMLSP
RNRRLRANEMDVLSDDESASGEDGATDDAPLPTDSLSPSSIGLTCTIAGEVQSVVVTGRW
GRYKRERSSTQVNEKGNPLTVWKRYPMGNVGLPIPLIEGDIPPVPLDMSQPDVYLQGRVR
KLNGDWVVSLFMVNGQTESESLKDEMWAFQPELEVRGAEGGAVFRRRHLFRDEAKADPVQ
HAEQMALEMLYRAQVEFAVGHGVAVHADVDPGDSTKCVRLRTRAIPTYEVPQTTPPTAED
IPRLAEVVLDMKALAEMSDEELFRSLRALPAAYKEWIEKESARIDDPKEELEAYRKVAES
AITNCEVACERIAAGIELLQQDAKALKAFRFANRAMWQQRSHTLISESKRAGRKVGAEEL
DRPENYSWRPFQLAFVLLNLPGVTQLDHPERSSAPSAIADLLWFPTGGGKTEAYLGLTAY
TLGIRRLQGSVAGRLGHAGVAVIMRYTLRLLTLQQFQRAAALICACEVIRRGSPDVWGTE
PFRVGLWVGMKTSPNTVADAHQSTLGGRGVGMGSGTGSPLQLTNCPWCGEGLDLGNDVKV
ETYAQGRARVFTYCSDRLGQCEFSRAKAPDEGIPVLTVDEEIYRRLPALLIATVDKFAQM
PWNGTTQMLFGQVDGYCPRHGFTSPCLEDASSHPTKNGLPAVRAVEHGPLRPPDLIIQDE
LHLISGPLGSLVGLYETAVDQLCSWSVDGKVVRPKLIASTATIRQATEQVRSLFLRDVRV
FPPQGLDVRDNFFSLQREPSERYPGRRYVGVSAFGRRLKVALIRVYSAYLAASQALFLRY
GKAADPWMTLLGYFNSMRELGGMRRLVDDDIRARLRDMDSRGLAKRHTPALEELTSRKSS
RDIPALLDRLEFAHDPLLPPHARAAKKPLRANPLDVVLATNMISVGVDVKRLGLMVVGGQ
PKGTAEYIQATSRVGRNTQAPGLVCTVYNWGRPRDLSHYERFEHYHSTFYQHVEALSVTP
FAARAVDRGISAVLAALVRLPASEFNENLAAGRLDGSHAIVKDAVKAITERAMSVTQSTA
QGQRVEKLLKARIDYWLKKAAPKPGGARLGFQGQRDGTTVALLEKTGAGDWEEFTCLGSL
RDVEPSVGLIMDDKPLDDGYGQGYSAPLPATASTPPATNGGQQ