Protein Info for ABIE53_003059 in Paraburkholderia graminis OAS925

Annotation: ribonuclease E

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1096 TIGR00757: ribonuclease, Rne/Rng family" amino acids 13 to 425 (413 residues), 528 bits, see alignment E=8.5e-163 PF00575: S1" amino acids 36 to 116 (81 residues), 35.9 bits, see alignment 1.2e-12 PF10150: RNase_E_G" amino acids 120 to 391 (272 residues), 331.2 bits, see alignment E=7.7e-103 PF20833: RNase_E_G_Thio" amino acids 403 to 487 (85 residues), 115.6 bits, see alignment 1.4e-37

Best Hits

Predicted SEED Role

"Ribonuclease E (EC 3.1.26.12)" in subsystem RNA processing and degradation, bacterial or Ribosome biogenesis bacterial (EC 3.1.26.12)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 3.1.26.12

Use Curated BLAST to search for 3.1.26.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1096 amino acids)

>ABIE53_003059 ribonuclease E (Paraburkholderia graminis OAS925)
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSTGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDT
PHYKLERLRHDDARLDEPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEK
PAPSAPVRPVAAPAPVAVTQASGGFIGWLKNLFGVQPAAPAPVAPATTEKQARPQRGERT
ERGERTGERGGDRNRNRRGGAGGRDVAARGEGANGGRQGQQPSQRREEREPREAREGREV
REPREGREPREAREAREPRGNREPRENREPREAREGREGRDRDTRGADRAEAVESTPRGE
RQERGERRERGERTERGERRKPQTETADALTQADTQIAEDVAQNQAALTENVAPVDQEAV
AREGEERRRRRRGRRGGRREREEDVNGNLAADVAEAEGDNANVSEDAPVRVAQQPVERKP
EANEANEVAPVEVVVAAVATEKAVVSELHAATETPALAAEKAAKTETIVPVAELPAAPAA
VEPVAEAPVAEAPVAPTAPAEPAQAVLAAAETVSPAAEPVVHEEAPAVVPAAEAQAAPAH
VEPAAPAEVVAAPVAEPAPQAEIVEPKPAEDESAPAVEPAIAAPSQAVQATQAAEVSHAA
RPAQASFNGGVSAEALKPVLEKAGLVWVNTDADKLRAAQEAAAQTVKPPRVVRERKPLPP
TDSAPMQQVETNRHPQ