Protein Info for ABIE53_003053 in Paraburkholderia graminis OAS925
Annotation: septum formation protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 86% identical to NTPPB_PARXL: 7-methyl-GTP pyrophosphatase (Bxeno_A3340) from Paraburkholderia xenovorans (strain LB400)
KEGG orthology group: K06287, septum formation protein (inferred from 90% identity to bug:BC1001_2553)MetaCyc: 48% identical to m7GTP pyrophosphatase (Escherichia coli K-12 substr. MG1655)
RXN0-7079
Predicted SEED Role
"FIG146278: Maf/YceF/YhdE family protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (205 amino acids)
>ABIE53_003053 septum formation protein (Paraburkholderia graminis OAS925) MPDSPQSPSRLILASSSPYRRELLERLRVPFDVAVPAIDETPHAGETPEATALRLAEAKA RAVARTFSPDQAVLVIGSDQVATYDGLQIGKPGTHDKALAQLQAMRGREVLFHSALCLFD SRSGAAQTVDVVTRVQFRDLPDAALEAYLRAETPYDVAGSAKSEGLGIALLEAIHSDDPT ALIGLPLIALSGMLLTAGYPLLGAQ