Protein Info for ABIE53_002862 in Paraburkholderia graminis OAS925

Annotation: outer membrane protein assembly factor BamC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF06804: Lipoprotein_18" amino acids 39 to 240 (202 residues), 60.7 bits, see alignment E=6.1e-21 amino acids 271 to 406 (136 residues), 51.3 bits, see alignment E=4.5e-18

Best Hits

KEGG orthology group: K07287, lipoprotein-34 (inferred from 95% identity to bug:BC1001_2374)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>ABIE53_002862 outer membrane protein assembly factor BamC (Paraburkholderia graminis OAS925)
MTHLRLTKRFAVMLMAGGLVAGCGTSSPTKVDYKSDSKSKQASLAVPPNLIDETADQRSL
PPQGGETSLSALRQVQAQAPAANTVSVVPAVSGMHIQRDGTESWLVIDSKTPAEAWPQIR
RFWQEQGFLLVVDQRDKGVMETDWNETHAQINDGLIRSTLSKAMGNSYVTSERNKYRTRL
ETAPNGGTYVFISQKGMREALTGTNNDSSTWQPKANDPGLEQEYLKRLMAALALADSRAK
SGGADTAALSPAGAQVAPNAAANGAKSAAAATAAQNVMLSAQQPVRDPDAANGPGQLSSN
ELTLGEPYDRAWLRVGLALDRSNFTVDDRDLTRGLYFVRYVDPKDMTSAEQGFWSQVFHG
KKEKVAKQYRVNVRALTPDQTRVAVVDDKGGLDESPQAKQILTLMADQLR