Protein Info for ABIE53_002842 in Paraburkholderia graminis OAS925

Annotation: putative MFS family arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 transmembrane" amino acids 18 to 36 (19 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 142 to 163 (22 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details amino acids 255 to 274 (20 residues), see Phobius details amino acids 285 to 302 (18 residues), see Phobius details amino acids 308 to 326 (19 residues), see Phobius details amino acids 347 to 366 (20 residues), see Phobius details amino acids 372 to 392 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 24 to 194 (171 residues), 58 bits, see alignment E=8.5e-20 PF07690: MFS_1" amino acids 26 to 202 (177 residues), 79.7 bits, see alignment E=2e-26 amino acids 225 to 388 (164 residues), 44.2 bits, see alignment E=1.3e-15

Best Hits

Swiss-Prot: 44% identical to YGAY_ECO57: Uncharacterized transporter YgaY (ygaY) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 96% identity to bug:BC1001_2352)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (400 amino acids)

>ABIE53_002842 putative MFS family arabinose efflux permease (Paraburkholderia graminis OAS925)
MSTSNASAPASADPSLRGLLLLLATIAGVAVANIYYNQPLLDNFRQSFPASASWVGVVPA
VTQLGYAAGMLLLAPLGDRFDRRALILLQTAGMCIALVVAAAAPALPVLVAASLAIGVLA
TIAQQAVPFAAELAPPSQRGHAVGTVMSGLLLGILLARTAAGFVAEYFGWRAVFAVSVLA
LLALAVVIVLRLPKSKPTSTLSYGKLLVSMWHLVVEHRALREASLTGAALFAGFSIFWSV
LALLLAGPPFHLGPQAAGLFGIVGAAGALAAPLAGKFADRRGPRAIITLSIVLVAISFVV
FGFSAKSIAGLVIGVIVLDVGVQAAQISNQSRIYALKPDARSRVNTVYMVAYFIGGALGS
AVGAAVWPVFGWVGVSVAGLVFAGLAAWNHLALQARTAKD