Protein Info for ABIE53_002716 in Paraburkholderia graminis OAS925

Annotation: LPLT family lysophospholipid transporter-like MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 36 to 36 (1 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 225 to 248 (24 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 319 to 352 (34 residues), see Phobius details amino acids 372 to 389 (18 residues), see Phobius details amino acids 395 to 413 (19 residues), see Phobius details PF07690: MFS_1" amino acids 10 to 378 (369 residues), 56.6 bits, see alignment E=1.1e-19

Best Hits

KEGG orthology group: None (inferred from 97% identity to bug:BC1001_2232)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (432 amino acids)

>ABIE53_002716 LPLT family lysophospholipid transporter-like MFS transporter (Paraburkholderia graminis OAS925)
MKKGFYTIIAAQFISSLADNALLIAAIALLSVIRSAAWVTPLLQIFFTVSYVLLAPFVGA
FADAMQKRHVMFISNALKASGCMMMIAGVHPMIAYGVVGFGAAAYSPAKYGILTELLPAE
KLVKANAWLESATVLSTIVGTMVGGALISTFADKFVARAHLPLIGSSADLAMFAVMLTYA
IAAAINIFIPDTGARYPNRLTEPTKLVGDFYHCFNVLWADKLAQIALWVTTLMWGGAVTL
QLLVLKWANVNLGLSLSKAAVMQGVTGLGIAVGAAAAAALIPLRRSLTVLPVGIVTGAVA
IAMAFYNKNLFPAGAGIHIGSYVVPVYILLAYPLMILLGALSGFFIVPMNAILQHRGATL
LSAGHSIAVQNFNQNLAVLLMLGAYALLLTAKMPAQWIIVVFGVFITFMMWLAKRRSAAN
ERSANMHALLEE