Protein Info for ABIE53_002212 in Paraburkholderia graminis OAS925

Annotation: MFS family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 36 to 53 (18 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 286 to 303 (18 residues), see Phobius details amino acids 323 to 341 (19 residues), see Phobius details amino acids 347 to 368 (22 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details amino acids 416 to 438 (23 residues), see Phobius details PF07690: MFS_1" amino acids 59 to 395 (337 residues), 79 bits, see alignment E=1.7e-26

Best Hits

KEGG orthology group: None (inferred from 91% identity to bgf:BC1003_1701)

Predicted SEED Role

"FIG00460430: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (448 amino acids)

>ABIE53_002212 MFS family permease (Paraburkholderia graminis OAS925)
MSSQPVRSASNAAALALNENDLQAALQNTKARRYTQLMLLVLAAGAIYPILYLRQVYQPT
MLEVFHITDSQLGYLYSSLGTIFLLSYLPSGWLADRIAPRLLICFSLIATGALGLWYSTA
PSFQMLMLIFGGWGLSTGLTFWAAVIKRVTMIAGADEQGRFFGLLDGGRGLIEAMLATVA
ITLFAWATQTKGESVAAGFRMVVYMYAFLCIALGVVLVLVKDPQGEQGARDDAANRAARR
RNNVLADLATLAKIPELWLVAAIVFCGYQVFWATYSFSAYLHEGEIGLTVVMAGTITTLK
LWMRPIGGIGGGFLGDRYSKVSVLVIALFLAALSLLGLMAAPRIASHVLLVFLVLFIGIL
TYAIRGLYWSLLDRCNIPVSTMGLAIGLISVLGYSPDVFLPLINGYLTQTFPGVFGYQLY
FGYVAAMAALGGFAGLALRNMLNRKEVA