Protein Info for ABIE53_002180 in Paraburkholderia graminis OAS925

Annotation: putative colanic acid biosynthesis UDP-glucose lipid carrier transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 signal peptide" amino acids 5 to 11 (7 residues), see Phobius details transmembrane" amino acids 12 to 25 (14 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details amino acids 442 to 456 (15 residues), see Phobius details TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 8 to 465 (458 residues), 473.1 bits, see alignment E=1.2e-145 TIGR03023: undecaprenyl-phosphate glucose phosphotransferase" amino acids 9 to 465 (457 residues), 513.8 bits, see alignment E=5.6e-158 PF13727: CoA_binding_3" amino acids 52 to 238 (187 residues), 202.4 bits, see alignment E=6.1e-64 PF02397: Bac_transf" amino acids 274 to 458 (185 residues), 234.6 bits, see alignment E=5.7e-74

Best Hits

KEGG orthology group: K03606, putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase (inferred from 97% identity to bug:BC1001_1659)

Predicted SEED Role

"Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)" (EC 2.7.8.6)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 2.7.8.6

Use Curated BLAST to search for 2.7.8.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (465 amino acids)

>ABIE53_002180 putative colanic acid biosynthesis UDP-glucose lipid carrier transferase (Paraburkholderia graminis OAS925)
MLSVLSRLIDIAMVALGAAIAAAVHNGEVVWLDDMQSVSLAFDVLLVVVFFPALGIYQSW
RGKPLYDLLCRVAGGWAMVEVTGVLISFSLHRADSLSRLWLVYWAAATIVLLIVTKVIVY
SILRGLRREGFNQRAVAIVGGAPYGRFLIQQMRSRPDAGFSPVVVFDENGTINPYEDPDA
AAAIEGVPVERDYQRMIQLVRQRAIRELWLALPISKEKEIHRIVMDLRNDFVNIRFIPDV
RSLTLFNQPMVELLGVPAINLAASPITDLRVLPKRIFDRLFALAALTALAPLMLGIAVLV
KLSSPGPVFFRQKRKGIDGNEFEIYKFRSMKVHKEEAGKITQATRRDPRITAVGAFLRRT
SLDELPQFINVLRGEMSVVGPRPHALEHDDIYKDLVKGYMHRYRIKPGITGWAQINGYRG
ETDRIEKMMGRVKLDLYYMQHWTFWLDIKIVVLTLWKGFVGSNAY