Protein Info for ABIE53_002108 in Paraburkholderia graminis OAS925

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1171 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 25 to 41 (17 residues), see Phobius details amino acids 266 to 289 (24 residues), see Phobius details amino acids 299 to 318 (20 residues), see Phobius details amino acids 326 to 346 (21 residues), see Phobius details amino acids 352 to 374 (23 residues), see Phobius details amino acids 381 to 398 (18 residues), see Phobius details amino acids 405 to 423 (19 residues), see Phobius details amino acids 430 to 448 (19 residues), see Phobius details amino acids 459 to 477 (19 residues), see Phobius details amino acids 489 to 507 (19 residues), see Phobius details amino acids 513 to 533 (21 residues), see Phobius details amino acids 540 to 562 (23 residues), see Phobius details amino acids 568 to 583 (16 residues), see Phobius details amino acids 590 to 613 (24 residues), see Phobius details amino acids 624 to 643 (20 residues), see Phobius details amino acids 655 to 673 (19 residues), see Phobius details amino acids 693 to 712 (20 residues), see Phobius details amino acids 724 to 743 (20 residues), see Phobius details amino acids 750 to 767 (18 residues), see Phobius details amino acids 779 to 801 (23 residues), see Phobius details amino acids 813 to 832 (20 residues), see Phobius details amino acids 844 to 863 (20 residues), see Phobius details amino acids 875 to 899 (25 residues), see Phobius details amino acids 912 to 932 (21 residues), see Phobius details amino acids 946 to 970 (25 residues), see Phobius details amino acids 976 to 998 (23 residues), see Phobius details amino acids 1016 to 1034 (19 residues), see Phobius details PF10101: DUF2339" amino acids 268 to 672 (405 residues), 334.1 bits, see alignment E=1.1e-103 amino acids 699 to 975 (277 residues), 49.6 bits, see alignment E=1.4e-17

Best Hits

Predicted SEED Role

"FIG00461478: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1171 amino acids)

>ABIE53_002108 putative membrane protein (Paraburkholderia graminis OAS925)
MSVIFAVLGAVVGMLASLSNDLPLGYGALFGALAGFALARLRKRNPAGTAQSPLPGATAT
DAPGAPRDLAARVEWLERELVSLRGEIRQLREAAGIASADDDARAPAPMHASDAATMRDS
VAAGTTEHRYAIAPQEAVKLTARASAALAPAGGEAGASIDRQTETSTGMDAAAQTQAQTQ
AQAQAQAQLDAAARAQADAAAPAQPNLAGLPQATATDAAQPAQPQPDAAAHTQPDLAAPA
QPNLPPAPPRGPGVVERLFKAGRDWLFGGNTVVRVGIVVLFFGIAFLLKYAADNSLLPIE
FRLAGVALAATALLVLGWRIGDSRGAYGLVLQGGGVGALYLTVFAATRLYHLLPAGAALP
LMIATCALSAFLAVRQNAPSLAFMGSAGGFLAPLLLSTGGGSHVMLFSYYALLNAGIFAI
AWFKAWRPLNLLGFVFTFSIGAAWGATAYRPELLASTEPFLILFFLMYVGIALLYAVRRE
LTLRHYVDGTLVFGTPLVAIGLQSALMRGTEFGLAWSAVALAVFYLAIGGWLAPRRARLG
LLFDSMFALAVIFATLAVPLAFTGPTTSATWAIEGAAVTWLAVRQRRLVAFAFGLLMQLA
AAGAFVVGTVLSFSHAASLPVLNGAYLASVLIALAGIFTGWRLHGRSEARDWHAWLPQIG
VVASLWGLLWWVGGGLNEIQSYVHAYVPDDRDRVGIAFVALFAALSAWLAHGARRKLRWP
LAEWPALALVPVLAALTLELFALNMRPVSGYGWLVCLLVAVASYALLWRQQRDVGERILA
PLHTLMFWTAGTLAALEGYWALRAYVPEGAWSWSAWAYGFGALLLLLAGVGHRLRWPVAR
FTRAYQVWAAAPLAALLWAWTIASVTSDGSAAPLFWLPIVNPLDVAQILVFVAGAVWLRR
LRALGVQWHPRAFDYAVLATLFLWFNALLLRTLHHHFDAAYDVTAVLASFTLQQVFLVGW
SAFAFAGLWLARRDNIVRLCAIASTPLVLVMWLWTFYANLTQDGGAWARLPLLNPLDLVQ
AVVFALAALWLVRVHRLGRAARRLPAAAASRGRGDRLRVVECDAAAHAASLDRRAVRVRA
DVRVDARAGVGLGLLDALRAGGDDLGDEARKPYRVVHRRRVARRDCRQIISVRPVARDGD
RAHRIVYRYRPDVAADRLLLAAAAQADGQGN