Protein Info for ABIE53_001663 in Paraburkholderia graminis OAS925

Annotation: uncharacterized protein (TIGR00645 family)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 transmembrane" amino acids 13 to 34 (22 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 104 to 123 (20 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 6 to 166 (161 residues), 199.9 bits, see alignment E=1.7e-63 PF03350: UPF0114" amino acids 8 to 124 (117 residues), 118.8 bits, see alignment E=7.7e-39

Best Hits

Swiss-Prot: 58% identical to Y1258_PASMU: UPF0114 protein PM1258 (PM1258) from Pasteurella multocida (strain Pm70)

KEGG orthology group: None (inferred from 96% identity to bgf:BC1003_2252)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (188 amino acids)

>ABIE53_001663 uncharacterized protein (TIGR00645 family) (Paraburkholderia graminis OAS925)
MRPLPAVIFMSRWLQVPLYLGLIVAQGVYVVLFLKEVWHLVTASMTLDETNIMLVVLGLI
DVVMISNLLIMVIIGGYETFVSRLGVEGHPDEPEWLDHVNAGVLKVKLSMALISISSIHL
LKTFISPDQNTTHAIMWQVIIHVAFLISALVMAFVDRLTTHTHPTHFQEPADLQPLGSAG
SSPLKAHD