Protein Info for ABIE53_001632 in Paraburkholderia graminis OAS925

Annotation: protein ImuB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00817: IMS" amino acids 69 to 173 (105 residues), 28.2 bits, see alignment E=8.2e-11

Best Hits

KEGG orthology group: K14161, protein ImuB (inferred from 89% identity to bug:BC1001_1125)

Predicted SEED Role

"DNA polymerase-like protein PA0670" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (601 amino acids)

>ABIE53_001632 protein ImuB (Paraburkholderia graminis OAS925)
MLWIAVALPLLSLEAVKPLTSLPDGSSAKQNRCEPSRDANPSCDAGNIADAHCYALADHA
HILLPDVDALRAGVQPGHSRSYALALAPGLKLLTADAARETQAFEAIALALLTYTPKVSL
ADTHTLLLEVGSGLRLFGGLRALLSRVSSTVAEFGYTARIACAPTAWGAWLLAQARANRH
GRRWHVVQETSLTRVLDRLPVSLLPVAQTHRDAFVHVGCTTLADLRQLPRAGVVRRFGGG
ILDLLAQAYGTRPDPRESFRAPASFHAQLELPSRVDNADALLFAARRLIVQLAGWLSAHH
AALSGYTLLLEHELASRHSPKTSSLKVAWAIPSRDAEHLIWLLREKLNQTVLAAPVIELK
LVADQIAEYAGQSDTLFPMPESDGESIVRLLERLSARLGPENVLQMSVQDDHRPEHAMRV
EAYQAQDFARKKRSQAKARPRIKADKTWLTDELRNAAAEGASPSSAAETETDAEAKKQAT
PRPSAATNAKTATAFTPQQASQQAPQQPPQASLNLPDSALPSQPRPIWMLDKPLRLMMRD
QRPIYRRPLKMLTRTERIEAGWWDGDRVERDYYVAADDRGHMFWVYRERISGDWYLQGLF
G