Protein Info for ABIE53_001272 in Paraburkholderia graminis OAS925

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 222 to 252 (31 residues), see Phobius details PF01062: Bestrophin" amino acids 1 to 286 (286 residues), 307.6 bits, see alignment E=4.8e-96

Best Hits

Swiss-Prot: 79% identical to Y3414_RALSO: UPF0187 protein RSc3414 (RSc3414) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K08994, putative membrane protein (inferred from 90% identity to bug:BC1001_0782)

Predicted SEED Role

"probable membrane protein STY1534"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>ABIE53_001272 putative membrane protein (Paraburkholderia graminis OAS925)
MIIRPHLHWFRMLLAWRGSVLPQLLPRLFLIFAISIVAVAAHDHLLPISLNLNTTAPFSL
VGIALAVFLGFRNNASYDRWWEARKLWGQLLNDARSLIRQALTLRTTPLPKEDAAEFCAA
LGALPHALRHQLRKSDPREDLAARLPPALFERVMASRYQPATLMLVLGEWVQRQAQKGSI
DPMAVLAFDRNLNGLSDVIGGCERIASTPLPFAYSVMIHRTVYFFCASLPFGLVDSIGIF
TPVFAVFVAYTFMAHEAIASQIEEPFGTDDNDLALHTMSLTIEDALRDLRGEPAVALPDL
QADSYALT