Protein Info for ABIE53_001069 in Paraburkholderia graminis OAS925

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1324 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details PF13429: TPR_15" amino acids 541 to 811 (271 residues), 295.4 bits, see alignment E=2.3e-92

Best Hits

Predicted SEED Role

"Extracellular Matrix protein PelB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1324 amino acids)

>ABIE53_001069 hypothetical protein (Paraburkholderia graminis OAS925)
MSAKRLRIAPAWLVYLLAGVVLLALYGVSPRGGLRQRVASVGAPNELSVAYLEAWSRVRP
DNEEFLALLGAQYSYLGRTADTERIAARMDALGTDDMRRSATMLRLSTAEQRTFATTEDD
PHRAVELAGFRAKLKAAARLQWAPKDVEWLAQRSAAAGLPDLAMQLYARLSANDPEGRTK
WDTQITRYALQVGDYRAAADAWFRQQAAAHTVDGQRHCFVAGIRALQAGNLLDDALAAAD
AHAGKLVDDPGTLVVLLSVARAANRPAAVDRYAKMLARYASIAPHDESPQAVPAHTASYA
YMDGPVAVNSGFLRASRRAAGGGVEGQGAVRVVRVSAASAASAATATKAASTPAAAPPSA
AALSSARSAGGGGIADTVFQAFVESGDLPNAQKIAAQEVQRDPRSALWVKRLAQVAEWNR
DPPLALKSWLEYAQVSNDPVGWQNVLRIAPMLNDDEAYLVALVHQARATPGDIKLVDSVI
ATYERLGRPDDGLSFLRSLPRGTNGDAIDQRIGTLAERAGHDDQALAIYRAVQARHPDDA
TAALRTASVLYRQGDYRASLAALKSARAGAKAGDEIFWRNYAELARLLQRDDDANEAYRH
LLANGTATSEDLGEMTDFYDPYPIDAGRVAELRFRREHTARALRDAIYYYLDAQALDRIA
TLLDGLTPQERVTAESSPALLGVRAEYYRLVGQPQNALADLKRAVDLPGAGSDVSAAYLW
TLVDYGSDADLRAALKRWRGSAAQSSALWGPFAAAEMRLNRPVAALEYLRRQTGVMSRDP
LWLLTYADAQEQSGHAGLAWTIRKKVWLQLQDEQAKLATPRNAQRASMRGRTLQDAETVA
DLRGRRVTLSTEFATGDTSAALLDGLMSNHATPADTAQTRRTLIGAVKGLPGGAPMQGAD
LPQNARVRGAVAKDVAIAWALSHESNPLAKRWLAQQYAERLSRPADARLTIALAENDVPE
MTRLLDEERSRLPVYDRIDATIAVDKPDRAQELAFDALGGAPEDTELHTRVTETALDWPQ
SIDASVTNYVEHPLDYVETTLAGSRKIAERYLVGVTAVQHFQHSTDITQLVNVPSVDRWL
NIYGERRTRDTSFTVTGGRRIASSSFYTLDLAGELGRNSPLTLGLRAGRNQVADETQSLL
VGGMKDNVIGDFTYRMTQHITFSGSVEADRFYSQARTYLGSGVLSTGEVSYRIRTQYPDY
TLRALITHGGYGASGQANPLISRLLPVALQPATPRDFMPDTYTQYGFFFGAGNDLLEQYT
HRWRPFFDVGLLHDSIQGWGPQFSAGIAGTVLGNDHLAVFLQHQRVSKIGTPVTVLGTRY
SWYY