Protein Info for ABIE53_000503 in Paraburkholderia graminis OAS925

Annotation: DNA invertase Pin-like site-specific DNA recombinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF00239: Resolvase" amino acids 3 to 136 (134 residues), 157.3 bits, see alignment E=1.5e-50

Best Hits

Swiss-Prot: 55% identical to GIN_BPMU: Serine recombinase gin (gin) from Escherichia phage Mu

KEGG orthology group: None (inferred from 60% identity to bcm:Bcenmc03_6785)

MetaCyc: 54% identical to e14 prophage; site-specific DNA recombinase (Escherichia coli K-12 substr. MG1655)
5.99.1.-

Predicted SEED Role

"DNA-invertase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>ABIE53_000503 DNA invertase Pin-like site-specific DNA recombinase (Paraburkholderia graminis OAS925)
MRIGYARVSTDDQNLDLQLAALKTACCDDIFTDQGISGARFSRPGLGQAITALTRGDTLV
VWRLDRLGRSLTKLVELVDELGVRGVQFVSLTECIDTTSPGGTLLFHIMAALAQFERSLI
GERTRAGMLAAKARGQHVGRRHAMTQIECVEAQQLLTLHSSDIVAKRFDVHPRTLLRSLR
RYGLEAHRLA