Protein Info for ABIE53_000500 in Paraburkholderia graminis OAS925

Annotation: putative DNA-binding transcriptional regulator YafY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 transmembrane" amino acids 190 to 207 (18 residues), see Phobius details PF13280: WYL" amino acids 158 to 333 (176 residues), 102.6 bits, see alignment E=1.2e-33

Best Hits

KEGG orthology group: None (inferred from 76% identity to bvi:Bcep1808_1333)

Predicted SEED Role

"Transcriptional factor MdcH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>ABIE53_000500 putative DNA-binding transcriptional regulator YafY (Paraburkholderia graminis OAS925)
MSDIDREIMRVLPDAATQSNYLSTPEIHRRLTNTVPDMPSSKTIYRHLAKLEEEGLVEMD
QRGTASVWRKKAGASGMAAKGGGLMNFDEALALQTLRRFSSRQIPELVAESLSAMFEIAD
TRLRRTNSETERKYSRWTSKVAVESGGFALHYPVIDRELFATVSSALFEERKLEIVYRPR
HNTDNDRAKVVLPFGLVEVGGLVYLVAGTEGKANPTMYRLDRLARAAALLESFAYPSTFS
LDAYVKQQRSFDFMVEKEVQLKLRFVGGAGDHLLEAPMSKDQKSARKDDALHVQGSVMLS
QRLRWWLRSFGPYVEVIGPASLRGELAEEAGELARIYGK