Protein Info for ABIE53_000426 in Paraburkholderia graminis OAS925

Annotation: integrase/recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 PF02899: Phage_int_SAM_1" amino acids 7 to 84 (78 residues), 56.2 bits, see alignment E=3.5e-19 TIGR02224: tyrosine recombinase XerC" amino acids 9 to 305 (297 residues), 344.5 bits, see alignment E=2.7e-107 PF00589: Phage_integrase" amino acids 110 to 291 (182 residues), 128.4 bits, see alignment E=2.5e-41

Best Hits

Swiss-Prot: 61% identical to XERC1_RALSO: Tyrosine recombinase XerC 1 (xerC1) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 96% identity to bgf:BC1003_0111)

Predicted SEED Role

"Site-specific tyrosine recombinase" in subsystem Proteasome bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>ABIE53_000426 integrase/recombinase XerC (Paraburkholderia graminis OAS925)
MTETDFIAAYLSNLEHERRLSAHTLRGYTHELEQLRLLAKGRPLESLTAVDIRGAVSRAH
AGGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKALPKALSVDDANRLME
SPPAASAEGLRDHAMLELFYSSGLRLSELVGLDARFADADGYRSAGWLKLDSAEVEVLGK
GKRRRIVPVGSKALTALNAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALLA
GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLARVYDQAH
PRAKKRD