Protein Info for ABIE53_000095 in Paraburkholderia graminis OAS925

Annotation: flagellar L-ring protein precursor FlgH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF02107: FlgH" amino acids 53 to 231 (179 residues), 204.3 bits, see alignment E=5.7e-65

Best Hits

Swiss-Prot: 82% identical to FLGH_BURP1: Flagellar L-ring protein (flgH) from Burkholderia pseudomallei (strain 1710b)

KEGG orthology group: K02393, flagellar L-ring protein precursor FlgH (inferred from 97% identity to bug:BC1001_3389)

Predicted SEED Role

"Flagellar L-ring protein FlgH" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (232 amino acids)

>ABIE53_000095 flagellar L-ring protein precursor FlgH (Paraburkholderia graminis OAS925)
MSYFTRNPVRSRMAAALVQLTLLAALGGCGLVPKQPITQQPMTAMPPMPPQAQSPGSIYN
PGYAGRPLFEDQRPRNVGDILTIVIQENVNATKSSGAGVNRNGTTSFDVPTAGFLGGLFG
KANLSASGANKFTSTGGANASNTFNGTITVTVTGVLPNGNLMVSGEKQMLINQGNEFVRF
SGVVNPNTISNLNAVYSTQVADAKIEYSAKGYVDEAENMGWLQRFFLNVSPW