Protein Info for ABIE51_RS19075 in Lysobacter sp. OAE881

Annotation: complex I NDUFA9 subunit family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 PF05368: NmrA" amino acids 6 to 232 (227 residues), 47.2 bits, see alignment E=9.1e-16 PF03435: Sacchrp_dh_NADP" amino acids 6 to 77 (72 residues), 27 bits, see alignment E=2.2e-09 PF01370: Epimerase" amino acids 6 to 117 (112 residues), 65.4 bits, see alignment E=2.5e-21 PF02254: TrkA_N" amino acids 7 to 77 (71 residues), 23.2 bits, see alignment E=3.3e-08 PF01073: 3Beta_HSD" amino acids 7 to 120 (114 residues), 50.3 bits, see alignment E=8e-17 PF16363: GDP_Man_Dehyd" amino acids 8 to 75 (68 residues), 29.3 bits, see alignment E=2.9e-10 PF13460: NAD_binding_10" amino acids 10 to 153 (144 residues), 99.3 bits, see alignment E=1.1e-31

Best Hits

KEGG orthology group: K00329, NADH dehydrogenase [EC: 1.6.5.3] K00356, NADH dehydrogenase [EC: 1.6.99.3] (inferred from 51% identity to tgr:Tgr7_0332)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.3, 1.6.99.3

Use Curated BLAST to search for 1.6.5.3 or 1.6.99.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>ABIE51_RS19075 complex I NDUFA9 subunit family protein (Lysobacter sp. OAE881)
MTQRHVVILGGTGFVGRHLVARLLQGGDRVTVLSRGADAAKRRLKPQGASLIEGDVADAD
FLAAVLDDADAVVNLIGILNEKGDRGDGFERVFVGITDALIDAMQRMGVRRLLQMSALNA
GRGESHYLQARGRAEQHVRTSGLDWTLLRPSVIAGPGDGLFCRFDGLLKFAPVLPIGRAD
ARFQPVWVGDVVEAFAKTLDEPRSIGQSYDLVGPDVMTLKQIVKLAARGRGRHRVVLGLP
TSLGKLQAEVGEWLPGKPISRDNWRSLQLDSVSMEDGLRRLNLTPTPVEPKLAEILAGC