Protein Info for ABIE51_RS18980 in Lysobacter sp. OAE881

Annotation: alpha-amylase family glycosyl hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 566 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF00128: Alpha-amylase" amino acids 95 to 417 (323 residues), 154.7 bits, see alignment E=2.5e-49

Best Hits

KEGG orthology group: K00701, cyclomaltodextrin glucanotransferase [EC: 2.4.1.19] (inferred from 69% identity to xcv:XCV2797)

Predicted SEED Role

"Cyclomaltodextrin glucanotransferase"

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (566 amino acids)

>ABIE51_RS18980 alpha-amylase family glycosyl hydrolase (Lysobacter sp. OAE881)
MRLKVPFRVRFRRRALAFALAASIPAAHAADAPDYYGTLEPFAKEAVYFVVTDRFVNGDP
SNDHRDQGGPDPATRTFDRPTAGSDAGDNVGYLGGDFKGIVDHLDYIRGMGFSALWITPI
VDNPDEAFTGGKPAQKGGFLTDGGKTGYHGYWGVNFYKLDEHLPSKGLDFKGLADAVHGQ
DMKLVLDIVGNHGSPAYSMPKAQPQFGQVFDRDGKLVADHQNLPPAKLDPKHDPLHRFYN
TTPGLAELSDFNENEPAVMDYLAGAYAQWIGQGADAFRIDTIGWLPHPFWHEFVARMRRE
KPGMFMFGEAFEYDAKKIAEHTWARNANVSVLDFPLKQGLEKAFGHERAGFEVLADRLYL
DGGPYANPYELATFYDNHDMARLDATDEGFIDAHNWLFTARGIPVVYYGSEIGFMRGKPE
HDGNRNYFGAERIASAASHPIHRNLSRIAHVRAASPALQRGLQVNVELKGGRAAFYRVYQ
HEGVSQIALVLLNKGDAPAAFDVKQYVQPGTWRATIAGNDTKVRAGGSLKATVPAHGVEV
FLLDAPVAQPQLRAELDRLMKVKRPE