Protein Info for ABIE51_RS18805 in Lysobacter sp. OAE881

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 713 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF07715: Plug" amino acids 57 to 167 (111 residues), 60.2 bits, see alignment E=2.7e-20 PF00593: TonB_dep_Rec" amino acids 277 to 675 (399 residues), 87.2 bits, see alignment E=2.2e-28

Best Hits

Predicted SEED Role

"Probable tonB-dependent receptor yncD precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (713 amino acids)

>ABIE51_RS18805 TonB-dependent receptor (Lysobacter sp. OAE881)
MISRRKRPAPAAHVPATAPLALALATLLFHSPAPAQTVSPEATTLDTVEVLGARHSLADF
PGSISVIEGDTLRAGQRQVSLAESLVRAPGITVLDRQNYAQDLQVQSRGFGARSTFGIRG
IKLIVDGIPSSALDGQGQAASFPLSALDRIQVLRGPLALQYGNAAGGAIVGETAFDGPAA
EVEGWLGSNSSARMAAGFEGASSNDAWQWRALGSWFTTDGDRPHSAAERAQLDGVAQYTP
NDHARLRIVAGALSQPYTDDPLGLTREQWERDPHGTDPVAEQFDTRKKIDNAQLGARWED
EYAQGREYWIGGYGVTRDVVQFLAIPPVAQRAPSSAGGVIDLGRRSSGVDAGHRWEFARG
ALTLGAEAGWLDEQRRGYENFVGDELGVRGRLRRDEDNRIRSTEAFVLGELRPAQDWTVL
GAVRRAKLRFESDDHYIAPGNGDDSGSLDYGETAAALGVSRAFGDGEIFASVGHGFETPT
VTELAYRPDGSAGFNIELQPAQFDTAEIGARWRFSAGKASVSAYRIDGEDEIVPADNRGG
RASFANAGRTRREGIEAGFEGRFHPQWSYALTANWLRARFTESFSYTVLTSGVERVQVVE
AGNRIPGIPRADGYAELAWNTRDGRTSAAVEMRASEGVPTDDRNTDASNGYATFALRLQW
RAANSGWYGFARVDNVFDRDYVGSVIVNEGNGRYFEPAPGRAFTLGLGWKAGG