Protein Info for ABIE51_RS17710 in Lysobacter sp. OAE881

Annotation: TlpA disulfide reductase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF08534: Redoxin" amino acids 62 to 189 (128 residues), 82.3 bits, see alignment E=3.1e-27 PF00578: AhpC-TSA" amino acids 62 to 179 (118 residues), 66.8 bits, see alignment E=1.9e-22

Best Hits

Predicted SEED Role

"Cytochrome c-type biogenesis protein ResA" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (198 amino acids)

>ABIE51_RS17710 TlpA disulfide reductase family protein (Lysobacter sp. OAE881)
MGSTAKILLVAAVAGALGVVAGLVVNGPGPLLRTEVGQRALQSAMDASAPKPPADLPVAR
RGEAIPRIRLPALDGATVELPAAYAGRPVLVNLWASWCGPCIEEMPELDRFAAAQGPNGT
QVVGIALDDPAAVEAFLKRVPVRYPILLDEAGPRDAGVQLGNPKGVLPYTALISADGRLI
KQKIGPFQHGEIDNWVAD