Protein Info for ABIE51_RS16730 in Lysobacter sp. OAE881

Annotation: flagellar filament capping protein FliD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 PF02465: FliD_N" amino acids 8 to 105 (98 residues), 80.3 bits, see alignment E=2.1e-26 PF07196: Flagellin_IN" amino acids 123 to 176 (54 residues), 31 bits, see alignment 3.5e-11 PF07195: FliD_C" amino acids 215 to 429 (215 residues), 188.6 bits, see alignment E=1.9e-59

Best Hits

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 47% identity to xal:XALc_1416)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>ABIE51_RS16730 flagellar filament capping protein FliD (Lysobacter sp. OAE881)
MAISTLGSGIDIPSLVSQLVAAERSPIESRIARGENAAKTQLSAMGSLKSIFSSLQTSLE
KLRKDGGTDARTATVQDKAGFTASADTTATVGEYKIEVESLASAHRLTSPAKAADAKIGT
GKLVIEAGDTKIEVDIADGRNTLSDIRTAINTAAAGKGVQASLVNADGGQHLVLTAVDSG
LEGKLRVTTSGGDGGLSALVYDPGVQTSMTETVAAKDAVVKVDGLTRTSSSNSLTDLLPG
VTLNLTEAKPGETFSLKVATDDAAVQKTLQAFVTAYNASISLTKSLTAYNAETKTASALT
GDSMVRGLQSSLRNMASENVVAFKALGLSINTDGTLALNTSTLTKALGEDPGALSRLFSG
EEGYGADLEGMLDSVLETDGLLDSRSDSLNARLKTYDKQYEDLDRRMESLQTRYTAQFTA
MEQMVTQLQGSSGFLSQQFG