Protein Info for ABIE51_RS13510 in Lysobacter sp. OAE881

Annotation: EAL domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 690 TIGR00229: PAS domain S-box protein" amino acids 142 to 245 (104 residues), 35.6 bits, see alignment E=9.1e-13 PF00989: PAS" amino acids 149 to 252 (104 residues), 31 bits, see alignment E=4.4e-11 PF13426: PAS_9" amino acids 163 to 248 (86 residues), 26.1 bits, see alignment E=1.7e-09 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 266 to 429 (164 residues), 73.2 bits, see alignment E=2e-24 PF00990: GGDEF" amino acids 271 to 425 (155 residues), 80.1 bits, see alignment E=3.3e-26 PF00563: EAL" amino acids 448 to 682 (235 residues), 183.4 bits, see alignment E=9.8e-58

Best Hits

KEGG orthology group: None (inferred from 57% identity to psu:Psesu_1337)

Predicted SEED Role

"FOG: PAS/PAC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (690 amino acids)

>ABIE51_RS13510 EAL domain-containing protein (Lysobacter sp. OAE881)
MQFGKDTALRLLIVDDSVEAAEAIVSGLRNSGIAVRPSRPENENELASLIASQTPDLVLA
AREATLVPITKVMQAVDASGKDLPVLMLLDTVDDSRLMEMITLGARGILLRRSGEHVNVR
VRQEWADLEARRSQRRLEAQIRETERRCDALIDSSREPIAYIHEGMHIRANPAYLEIFGF
ESFEDIEGMSLLDLIAPSKVEGFKQLLKQISKGEAPPRHETEARALDGSGFPAVMEFTPA
TYEGEHCLQVILRRQEVDPELAREVEELRQRDQVTGLFNRATFLRSLEDTVADAAQNASH
HGLLLIEPDHFNRLLQDIGLDAADALVSAMADRLRTALGADHIAARFGEHQFAVLVPNAD
HRRVTGLAETLRVAFADHVLETADRSVSTTVSIGGVLIGEKIASITAVLGKASQCLQSAS
GVGGNRTELFDPGAADRAEEERVEAWVQRIREALDADRFVMEYQPLIAMHGEPLEMYEAY
LRLQGEHGELVPPLAFLQIAEEHGLLWEIDRWVVGKAISVIGERSRAGRPTTVLVKITQA
SLQDNTLAQFIQEKLAKHGADGNLLVLQLPESKVFTHLRAAQEFQAQVAQYGVRVGLEQF
GVGLNSFQLLTHFNAALLKIDRSFMEDLGSNPAHQARLKEIAEKAREQGKTTIAEFVQDA
ASMSALFGAGIDYAQGNFLAPPGPAMDYEF